MATLAB codes for photometry. Inspired by David Barker’s code, see his here.
Pavlovian Reward Single Recording
Pavlovian Reward Batch Recording
Pavlovian Aversion Single Recording
Pavlovian Aversive Value Recording
Pavlovian Aversion Batch Recording
Self-administration, Magazine, other nodes from oxycodone-seeking analyses
MATLAB codes for analyzing MED-PC data. Inspired by David Barker’s original codes from the Mark West lab.
Data Grabber for Pavlovian Reward
Imaging
We often use the Perkin Elmer Harmony software for confocal imaging of fluorescent tissue. However, they don’t have software for stitching. Thanks to Jian Wei Tay over at the Biofrontiers Confocal Core, he made MATLAB code to stitch these images together. Download it here
Brain Mapping
JavaScript code to export X,Y positions of cells counted in Photoshop
MATLab script to tally raw output of SHARCQ according to merged atlas regions
Combine coordinates of SHARCQ-registered cells with region names
Documentation for 3D brain, cell count, and density rendering
3D printing stuff
Magazine, infrared beam wiring protector, and walls
Stand for e-phys or optical equipment